The technology provides tractography methods, devices, and software that reconstruct brain fiber pathways despite edema using multishell diffusion imaging and multi-compartment modeling. Problem: Surgical planning depends on accurate visualization of white matter pathways near lesions. Edema lowers anisotropy and can obscure underlying fiber bundles. Existing tractography tools can fail in edematous or crossing-fiber regions. These tools can also be complex, variable, and difficult to assess immediately. Solution: The technology acquires multishell diffusion imaging data with sensitivity to free water diffusion. It models the data with a multi-compartment approach that includes a free water compartment. It then reconstructs fibers using probabilistic tracking with a fiber orientation distribution. This approach provides fiber tracking in either the presence or absence of free water. Technology: The technology includes methods, an electronic device, and a computer program product. Some embodiments use a 3-shell sequence with specified b-values and gradient directions. The multi-compartment model includes free water correction and anisotropic diffusion modeling around axons. The outputs can identify tracts in edematous brains and produce fiber tract visualizations. Advantages:
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Schematic of the surgical planning tool methodology. Docket: 15-7235